5IPO
Solution Structure of Hge36: Scorpine-like Peptide from Hadrurus Gertschi
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D DQF-COSY | 3.0 mM Hge36 | 95% H2O/5% D2O | 3 mM | 3.0 | 585 mmHg | 25 | Varian INOVA 500 |
2 | 2D 1H-1H NOESY | 3.0 mM Hge36 | 95% H2O/5% D2O | 3 mM | 3.0 | 585 mmHg | 25 | Varian INOVA 500 |
3 | 2D 1H-1H TOCSY | 3.0 mM Hge36 | 95% H2O/5% D2O | 3 mM | 3.0 | 585 mmHg | 25 | Varian INOVA 500 |
4 | 2D 1H-15N HSQC | 3.0 mM [U-13C; U-15N] Hge36 | 95% H2O/5% D2O | 3 mM | 3.0 | 585 mmHg | 25 | Varian INOVA 500 |
5 | 2D 1H-13C HSQC | 3.0 mM [U-13C; U-15N] Hge36 | 95% H2O/5% D2O | 3 mM | 3.0 | 585 mmHg | 25 | Varian INOVA 500 |
10 | 3D CBCA(CO)NH | 3.0 mM [U-13C; U-15N] Hge36 | 95% H2O/5% D2O | 3 mM | 3.0 | 585 mmHg | 25 | Varian INOVA 500 |
9 | 3D HNCO | 3.0 mM [U-13C; U-15N] Hge36 | 95% H2O/5% D2O | 3 mM | 3.0 | 585 mmHg | 25 | Varian INOVA 500 |
8 | 3D HNCA | 3.0 mM [U-13C; U-15N] Hge36 | 95% H2O/5% D2O | 3 mM | 3.0 | 585 mmHg | 25 | Varian INOVA 500 |
7 | 3D HN(CO)CA | 3.0 mM [U-13C; U-15N] Hge36 | 95% H2O/5% D2O | 3 mM | 3.0 | 585 mmHg | 25 | Varian INOVA 500 |
6 | 3D HNCACB | 3.0 mM [U-13C; U-15N] Hge36 | 95% H2O/5% D2O | 3 mM | 3.0 | 585 mmHg | 25 | Varian INOVA 500 |
11 | 3D 1H-15N NOESY | 3.0 mM [U-13C; U-15N] Hge36 | 95% H2O/5% D2O | 3 mM | 3.0 | 585 mmHg | 25 | Varian INOVA 500 |
12 | 3D 1H-15N TOCSY | 3.0 mM [U-13C; U-15N] Hge36 | 95% H2O/5% D2O | 3 mM | 3.0 | 585 mmHg | 25 | Varian INOVA 500 |
13 | 2D 1H-1H TOCSY | 3.0 mM [U-13C; U-15N] Hge36 | 95% H2O/5% D2O | 3 mM | 3.0 | 585 mmHg | 25 | Bruker AvanceIII 700 |
15 | 2D 1H-1H NOESY | 3.0 mM Hge36 | 95% H2O/5% D2O | 3 mM | 3.0 | 585 mmHg | 25 | Bruker AvanceIII 700 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Bruker | AvanceIII | 700 |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | |
Conformers Calculated Total Number | |
Conformers Submitted Total Number | 20 |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | data analysis | CARA | Keller and Wuthrich | |
3 | chemical shift assignment | CARA | Keller and Wuthrich | |
4 | peak picking | CARA | Keller and Wuthrich | |
5 | chemical shift assignment | CARA | Keller and Wuthrich | |
6 | chemical shift assignment | CYANA | Guntert, Mumenthaler and Wuthrich | |
7 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
8 | refinement | AMBER | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman |