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Crystal structure of (R,S)-S-{4-[(5-Bromo-4-{[(2R,3R)-2-hydroxy-1-methylpropyl]oxy}- pyrimidin-2-yl)amino]phenyl}-S-cyclopropylsulfoximide bound to CDK2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 293.15 10% PEG 3350, 0.2M ammonium acetate, 100mM HEPES pH 7.8
Crystal Properties Matthews coefficient Solvent content 2.04 39.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.423 α = 90 b = 71.938 β = 90 c = 72.554 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 43.02 97.9 8.27 4.34 17395
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.03 43.02 17395 916 97.85 0.20574 0.20316 0.2115 0.25396 0.2616 RANDOM 31.553
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.02 -0.54 4.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.925 r_dihedral_angle_4_deg 18.105 r_dihedral_angle_3_deg 15.937 r_dihedral_angle_1_deg 6.14 r_long_range_B_refined 6.113 r_long_range_B_other 6.071 r_scangle_other 3.733 r_mcangle_it 2.876 r_mcangle_other 2.875 r_scbond_it 2.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.925 r_dihedral_angle_4_deg 18.105 r_dihedral_angle_3_deg 15.937 r_dihedral_angle_1_deg 6.14 r_long_range_B_refined 6.113 r_long_range_B_other 6.071 r_scangle_other 3.733 r_mcangle_it 2.876 r_mcangle_other 2.875 r_scbond_it 2.315 r_scbond_other 2.314 r_mcbond_other 1.777 r_mcbond_it 1.776 r_angle_refined_deg 1.651 r_angle_other_deg 0.864 r_chiral_restr 0.093 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2286 Nucleic Acid Atoms Solvent Atoms 92 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing