☰ Navigation Tabs
Crystal structure of CGL1 from Crassostrea gigas, ligand free form (CGL1/FREE)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 9.5 293 30% PEG 3000, 100mM CHES
Crystal Properties Matthews coefficient Solvent content 2.01 38.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.596 α = 90 b = 58.677 β = 93.78 c = 107.927 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 270 2013-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.9800 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 50 86.6 14.9 4.1 173353
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.1 30.9 162038 8593 85.09 0.17 0.16729 0.1772 0.21982 0.2291 RANDOM 22.392
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.11 -0.09 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.7 r_sphericity_free 33.031 r_dihedral_angle_4_deg 21.329 r_sphericity_bonded 18.39 r_dihedral_angle_3_deg 13.128 r_rigid_bond_restr 9.386 r_dihedral_angle_1_deg 7.302 r_long_range_B_refined 3.741 r_scangle_other 3.599 r_angle_other_deg 3.502
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.7 r_sphericity_free 33.031 r_dihedral_angle_4_deg 21.329 r_sphericity_bonded 18.39 r_dihedral_angle_3_deg 13.128 r_rigid_bond_restr 9.386 r_dihedral_angle_1_deg 7.302 r_long_range_B_refined 3.741 r_scangle_other 3.599 r_angle_other_deg 3.502 r_long_range_B_other 3.403 r_scbond_it 3.279 r_scbond_other 3.278 r_mcangle_it 2.42 r_mcangle_other 2.42 r_angle_refined_deg 2.289 r_mcbond_it 2.215 r_mcbond_other 2.215 r_chiral_restr 0.163 r_bond_refined_d 0.026 r_gen_planes_other 0.023 r_gen_planes_refined 0.015 r_bond_other_d 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4360 Nucleic Acid Atoms Solvent Atoms 698 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling