☰ Navigation Tabs
Crystal Structure of Copper Nitrite Reductase at 100K after 11.73 MGy
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 298 1.7 M Ammonium Sulphate, 0.1 M Sodium Acetate pH 4.5
Crystal Properties Matthews coefficient Solvent content 1.99 38.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.192 α = 90 b = 95.192 β = 90 c = 95.192 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 42.57 97.5 0.04 0.045 0.021 0.999 16.7 4.1 86878
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 99.7 1.261 1.455 0.71 0.485 3.9 4420
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.22 42.6 78412 4148 96.73 0.132 0.1303 0.135 0.1652 0.1675 RANDOM 17.719
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.095 r_sphericity_free 22.436 r_dihedral_angle_4_deg 17.1 r_dihedral_angle_3_deg 13.015 r_sphericity_bonded 8.426 r_dihedral_angle_1_deg 7.67 r_rigid_bond_restr 2.66 r_mcangle_it 1.796 r_angle_refined_deg 1.677 r_mcbond_it 1.459
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.095 r_sphericity_free 22.436 r_dihedral_angle_4_deg 17.1 r_dihedral_angle_3_deg 13.015 r_sphericity_bonded 8.426 r_dihedral_angle_1_deg 7.67 r_rigid_bond_restr 2.66 r_mcangle_it 1.796 r_angle_refined_deg 1.677 r_mcbond_it 1.459 r_mcbond_other 1.44 r_angle_other_deg 0.994 r_chiral_restr 0.11 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2566 Nucleic Acid Atoms Solvent Atoms 262 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction REFMAC phasing