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Crystal Structure of SRGAP2 F-BARx
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.25 293.15 F-BARx-WT was eluted from the anion exchange column (MonoQ-GL10/100, GE Healthcare) in buffer containing 5% Glycerol, 25 mM Tris buffer pH=7.4, 5 mM ?-mercaptoethanol, and ~0.16 M NaCl at the elution peak and concentrated to 18 mg/ml. F-BARx-WT crystals grew in 0.2 M ammonium citrate tribasic pH=7.25, 35% PEG1500.
Crystal Properties Matthews coefficient Solvent content 2.55 51.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 203.17 α = 90 b = 29.9 β = 91.87 c = 94.73 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2013-04-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.976 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 47.36 98.6 8.5 3.3 16087
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 101.53 15318 800 98.79 0.20661 0.20349 0.2033 0.26275 0.2628 RANDOM 80.05
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 8.23 -3.78 -1.76 -6.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.008 r_dihedral_angle_3_deg 22.128 r_dihedral_angle_4_deg 19.624 r_long_range_B_refined 15.824 r_mcangle_it 9.11 r_scbond_it 7.876 r_mcbond_it 5.907 r_dihedral_angle_1_deg 5.601 r_angle_refined_deg 1.678 r_chiral_restr 0.116
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.008 r_dihedral_angle_3_deg 22.128 r_dihedral_angle_4_deg 19.624 r_long_range_B_refined 15.824 r_mcangle_it 9.11 r_scbond_it 7.876 r_mcbond_it 5.907 r_dihedral_angle_1_deg 5.601 r_angle_refined_deg 1.678 r_chiral_restr 0.116 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3358 Nucleic Acid Atoms Solvent Atoms 19 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing