X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4LFS 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72922.1 M D/L-Malic acid NaCl
Crystal Properties
Matthews coefficientSolvent content
1.7329.07

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 65.849α = 90
b = 17.656β = 101.61
c = 49.469γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2015-03-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-C0.7749APS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.248.5910.0627.34.216200
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.21.2389.90.360.95434.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4LFS1.248.461537382790.170.155950.153890.19533RANDOM14.637
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.57-0.171.05-0.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg25.528
r_sphericity_free23.573
r_dihedral_angle_1_deg19.23
r_dihedral_angle_3_deg13.08
r_dihedral_angle_4_deg11.48
r_sphericity_bonded8.102
r_long_range_B_other3.682
r_long_range_B_refined3.679
r_angle_refined_deg2.231
r_scangle_other2.076
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg25.528
r_sphericity_free23.573
r_dihedral_angle_1_deg19.23
r_dihedral_angle_3_deg13.08
r_dihedral_angle_4_deg11.48
r_sphericity_bonded8.102
r_long_range_B_other3.682
r_long_range_B_refined3.679
r_angle_refined_deg2.231
r_scangle_other2.076
r_scbond_it1.838
r_scbond_other1.83
r_angle_other_deg1.805
r_rigid_bond_restr1.745
r_mcangle_it1.719
r_mcangle_other1.717
r_mcbond_it1.387
r_mcbond_other1.387
r_chiral_restr0.991
r_bond_refined_d0.013
r_gen_planes_refined0.012
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms555
Nucleic Acid Atoms
Solvent Atoms82
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing