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CRYSTAL STRUCTURE OF HUMAN GERMLINE ANTIBODY IGHV3-53/IGKV1-39
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 16% PEG 3K, 0.2 M AMMONIUM SULFATE, 5% DIOXANE
Crystal Properties Matthews coefficient Solvent content 2.57 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.38 α = 90 b = 89.38 β = 90 c = 212.38 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD RIGAKU SATURN 944 VARIMAX HF 2009-09-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 30 99.6 0.095 38.3 20.6 14402 -3 33.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.77 96.8 0.451 8.1 19.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.7 15 13583 722 94.6 0.19455 0.19089 0.1944 0.26362 0.2651 RANDOM 49.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 0.19 0.37 -0.56
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 40.751 r_scangle_it 40.34 r_dihedral_angle_2_deg 35.847 r_dihedral_angle_4_deg 19.178 r_dihedral_angle_3_deg 16.616 r_dihedral_angle_1_deg 6.346 r_mcangle_it 4.735 r_mcbond_it 2.307 r_angle_refined_deg 1.213 r_chiral_restr 0.073
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 40.751 r_scangle_it 40.34 r_dihedral_angle_2_deg 35.847 r_dihedral_angle_4_deg 19.178 r_dihedral_angle_3_deg 16.616 r_dihedral_angle_1_deg 6.346 r_mcangle_it 4.735 r_mcbond_it 2.307 r_angle_refined_deg 1.213 r_chiral_restr 0.073 r_bond_refined_d 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_refined r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3236 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms 11
Software Software Software Name Purpose XDS data reduction XDS data scaling REFMAC refinement REFMAC phasing