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The crystal structure of hemagglutinin from A/gyrfalcon/Washington/41088-6/2014 influenza virus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 293 0.1M Sodium Citrate: Citric acid, pH 5.5, 20% PEG (w/v) 3000
Crystal Properties Matthews coefficient Solvent content 3.18 61.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.328 α = 90 b = 252.385 β = 90 c = 70.623 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2015-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1.0 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.81 50 96.5 12.3 5.2 53667
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.81 49.66 50896 2723 96.03 0.22943 0.22799 0.2283 0.25627 0.2555 RANDOM 63.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.72 1.93 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.712 r_dihedral_angle_3_deg 21.665 r_dihedral_angle_4_deg 21.252 r_long_range_B_refined 9.799 r_long_range_B_other 9.799 r_dihedral_angle_1_deg 8.059 r_scangle_other 6.666 r_mcangle_it 5.897 r_mcangle_other 5.897 r_scbond_it 4.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.712 r_dihedral_angle_3_deg 21.665 r_dihedral_angle_4_deg 21.252 r_long_range_B_refined 9.799 r_long_range_B_other 9.799 r_dihedral_angle_1_deg 8.059 r_scangle_other 6.666 r_mcangle_it 5.897 r_mcangle_other 5.897 r_scbond_it 4.103 r_scbond_other 4.101 r_mcbond_it 3.577 r_mcbond_other 3.562 r_angle_refined_deg 1.74 r_angle_other_deg 0.995 r_chiral_restr 0.096 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_gen_planes_other 0.005 r_bond_other_d 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11934 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 285
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PDB_EXTRACT data extraction