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The crystal structure of hemagglutinin from A/Sichuan/26221/2014 (H5N6) influenza virus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 7 293 0.1M Imidazole, pH7, 22.5% PolyPure PEG 0.3-10KDa
Crystal Properties Matthews coefficient Solvent content 2.86 57.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.505 α = 90 b = 104.418 β = 90 c = 215.692 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2014-10-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 50 100 25.8 7.3 74754
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.45 49.39 70912 3763 99.62 0.19303 0.19118 0.1969 0.2274 0.2315 RANDOM 58.397
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.63 -0.53 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.328 r_dihedral_angle_4_deg 19.821 r_dihedral_angle_3_deg 19.151 r_long_range_B_other 10.544 r_long_range_B_refined 10.503 r_scangle_other 7.719 r_dihedral_angle_1_deg 6.953 r_mcangle_other 6.019 r_mcangle_it 6.018 r_scbond_it 4.995
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.328 r_dihedral_angle_4_deg 19.821 r_dihedral_angle_3_deg 19.151 r_long_range_B_other 10.544 r_long_range_B_refined 10.503 r_scangle_other 7.719 r_dihedral_angle_1_deg 6.953 r_mcangle_other 6.019 r_mcangle_it 6.018 r_scbond_it 4.995 r_scbond_other 4.995 r_mcbond_it 3.945 r_mcbond_other 3.942 r_angle_refined_deg 1.713 r_angle_other_deg 1.166 r_chiral_restr 0.099 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.006 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11598 Nucleic Acid Atoms Solvent Atoms 698 Heterogen Atoms 228
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing