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The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.1M HEPES pH 7.5, 10% w/v PEG 3350, 0.2M L-Proline
Crystal Properties Matthews coefficient Solvent content 2.61 52.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.323 α = 90 b = 82.24 β = 90 c = 101.416 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9793 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 30 98.2 15.6 5.6 30053
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.2 29.36 30053 1609 98.22 0.20906 0.20648 0.2088 0.25596 0.2569 RANDOM 39.896
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.48 -6.33 3.85
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 63.466 r_dihedral_angle_2_deg 32.277 r_dihedral_angle_3_deg 16.486 r_dihedral_angle_4_deg 14.153 r_sphericity_bonded 12.651 r_dihedral_angle_1_deg 6.057 r_rigid_bond_restr 2.474 r_angle_other_deg 1.408 r_angle_refined_deg 1.286 r_chiral_restr 0.09
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 63.466 r_dihedral_angle_2_deg 32.277 r_dihedral_angle_3_deg 16.486 r_dihedral_angle_4_deg 14.153 r_sphericity_bonded 12.651 r_dihedral_angle_1_deg 6.057 r_rigid_bond_restr 2.474 r_angle_other_deg 1.408 r_angle_refined_deg 1.286 r_chiral_restr 0.09 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2858 Nucleic Acid Atoms 1174 Solvent Atoms 68 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing