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DNA duplex containing a ribonolactone lesion
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 0.85 mM oligonucleotide 100% D2O 120 mM 6 1 bar 283 Bruker AVANCE III 500 2 2D 1H-1H TOCSY 0.85 mM oligonucleotide 100% D2O 120 mM 6 1 bar 283 Bruker AVANCE III 500 3 2D DQF-COSY 0.85 mM oligonucleotide 100% D2O 120 mM 6 1 bar 283 Bruker AVANCE III 500
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 500
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 10 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment CcpNmr Analysis CCPN 2 structure calculation Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman