Solution Structure of TAZ2-p53AD2
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D 1H-15N NOESY | 1 mM [U-13C; U-15N] TAZ2-p53AD2, 20 mM TRIS, 50 mM sodium chloride, 2 mM DTT, 10 % [U-2H] D2O | 90% H2O/10% D2O | 50 mM | 6.8 | 1 atm | 305 | Bruker AVANCE 900 |
| 2 | 3D 1H-13C NOESY | 1 mM [U-13C; U-15N] TAZ2-p53AD2, 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 99 % [U-2H] D2O | 99% D2O, 1% H2O | 50 mM | 6.4 | 1 atm | 305 | Bruker AVANCE 900 |
| 3 | 3D HNCACB | 1 mM [U-13C; U-15N] TAZ2-p53AD2, 20 mM TRIS, 50 mM sodium chloride, 2 mM DTT, 5 % [U-2H] D2O | 90% H2O/10% D2O | 50 mM | 6.8 | 1 atm | 305 | Bruker DRX 600 |
| 4 | 3D HCCH-COSY | 1 mM [U-13C] TAZ2, 1 mM p53AD2(38-61), 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 5 % [U-2H] D2O | 99% D2O, 1% H2O | 50 mM | 6.4 | 1 atm | 305 | Bruker DRX 600 |
| 5 | 3D HCCH-COSY | 1 mM [U-13C] p53AD2, 1 mM TAZ2, 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 99 % [U-2H] D2O | 99% D2O, 1% H2O | 50 mM | 6.4 | 1 atm | 305 | Bruker DRX 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 900 |
| 2 | Bruker | DRX | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing, molecular dynamics | Initial structure generation, Refinement of CYANA structures | NMRView |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | chemical shift assignment | NMRView | 5.0.4 | Johnson, One Moon Scientific |
| 2 | structure calculation | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
| 3 | refinement | Amber | 12 | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman |
| 4 | data analysis | PSVS | 1.5 | Bhattacharya and Montelione |














