☰ Navigation Tabs
Re-refinement of 4xan: hen lysozyme with carboplatin in sodium bromide solution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4XAN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 4.7 297 CO-CRYSTALLIZING 20 MG ML HEWL WITH 1.4 MG CARBOPLATIN IN 75 MicroL DMSO, 462.5 MicroL 0.1 M SODIUM ACETATE, 462.5 MicroL 1 M NABR SOLUTION., PH 4.7, BATCH MODE, TEMPERATURE 297K .
Crystal Properties Matthews coefficient Solvent content 1.92 35.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.58 α = 90 b = 78.58 β = 90 c = 37.29 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9163 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 39.29 79.09 0.095 4.59 10.8 23088 14.8164861805
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.346 31.05 2.058 0.23 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4xan 1.29990102989 39.29 0.409961723993 23088 2183 79.0935246558 0.166638373527 0.164204574395 0.1687 0.214997648104 0.2154 Random 19.8326076049
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.2929399304 f_angle_d 1.18333899677 f_chiral_restr 0.0844146767182 f_bond_d 0.0100569036924 f_plane_restr 0.00544896578564
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 28
Software Software Software Name Purpose PHENIX refinement PHASER phasing EVAL data scaling EVAL data reduction