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Structure of EAV NSP11 H141A mutant at 3.10A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5EYI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 277 PEG
Crystal Properties Matthews coefficient Solvent content 3.24 62.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 129.136 α = 90 b = 133.742 β = 90 c = 145.268 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2013-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-1A 1 Photon Factory BL-1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 50 90.7 21 7.7 23202 19651
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.15
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5EYI 3.1 50 19651 1052 89.2 0.21064 0.20849 0.2099 0.25199 0.2527 RANDOM 64.398
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 1.2 -0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.637 r_dihedral_angle_3_deg 17.129 r_dihedral_angle_4_deg 16.864 r_dihedral_angle_1_deg 7.201 r_long_range_B_refined 6.069 r_long_range_B_other 6.068 r_mcangle_it 3.633 r_mcangle_other 3.632 r_scangle_other 3.121 r_mcbond_it 2.135
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.637 r_dihedral_angle_3_deg 17.129 r_dihedral_angle_4_deg 16.864 r_dihedral_angle_1_deg 7.201 r_long_range_B_refined 6.069 r_long_range_B_other 6.068 r_mcangle_it 3.633 r_mcangle_other 3.632 r_scangle_other 3.121 r_mcbond_it 2.135 r_mcbond_other 2.135 r_scbond_it 1.808 r_scbond_other 1.808 r_angle_refined_deg 1.283 r_angle_other_deg 0.938 r_chiral_restr 0.073 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6658 Nucleic Acid Atoms Solvent Atoms 125 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling BALBES phasing