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Human Aldose Reductase in Complex with NADP+ and WY14643 in Space Group P212121
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3Q65
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 2.04 M Ammonium Sulfate, 0.1M HEPES pH 7.5, 7% polyethylene glycol 400
Crystal Properties Matthews coefficient Solvent content 2.6 52.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.306 α = 90 b = 85.917 β = 90 c = 104.37 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 0.9795 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.649 52.18 92.5 0.058 0.026 0.999 14.5 5.6 85620
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.649 1.654 61.6 0.452 0.252 0.932 2.3 3.5 12715
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 3Q65 1.65 52.18 85620 4556 99.42 0.1693 0.1679 0.182 0.1953 0.2073 RANDOM 23.631
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.04 -2.05 3.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.578 r_dihedral_angle_3_deg 11.854 r_dihedral_angle_4_deg 8.494 r_dihedral_angle_1_deg 5.706 r_mcangle_it 2.56 r_mcbond_it 2.034 r_mcbond_other 2.031 r_angle_refined_deg 1.692 r_angle_other_deg 0.991 r_chiral_restr 0.104
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.578 r_dihedral_angle_3_deg 11.854 r_dihedral_angle_4_deg 8.494 r_dihedral_angle_1_deg 5.706 r_mcangle_it 2.56 r_mcbond_it 2.034 r_mcbond_other 2.031 r_angle_refined_deg 1.692 r_angle_other_deg 0.991 r_chiral_restr 0.104 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5050 Nucleic Acid Atoms Solvent Atoms 569 Heterogen Atoms 178
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction autoPROC data scaling REFMAC phasing