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HETEROYOHIMBINE SYNTHASE THAS2 FROM CATHARANTHUS ROSEUS - APO FORM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5H81
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 NULL
Crystal Properties Matthews coefficient Solvent content 2.27 45.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.36 α = 90 b = 88.08 β = 90 c = 121.39 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2014-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9200 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 60.69 99.9 0.14 0.033 0.999 17 18.8 49345 31.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.1 99.9 1.882 0.439 0.639 1.9 19.2 3570
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5H81 2.05 60.69 46829 2516 99.87 0.1882 0.1862 0.1941 0.2254 0.2319 RANDOM 43.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 -1.03 0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.812 r_dihedral_angle_4_deg 13.807 r_dihedral_angle_3_deg 12.964 r_dihedral_angle_1_deg 6.246 r_mcangle_it 3.146 r_mcbond_it 2.209 r_mcbond_other 2.209 r_angle_refined_deg 1.488 r_angle_other_deg 1.172 r_chiral_restr 0.089
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.812 r_dihedral_angle_4_deg 13.807 r_dihedral_angle_3_deg 12.964 r_dihedral_angle_1_deg 6.246 r_mcangle_it 3.146 r_mcbond_it 2.209 r_mcbond_other 2.209 r_angle_refined_deg 1.488 r_angle_other_deg 1.172 r_chiral_restr 0.089 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5107 Nucleic Acid Atoms Solvent Atoms 320 Heterogen Atoms 4
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing XDS data reduction