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DNA targeting ADP-ribosyltransferase Pierisin-1 in complex with beta-NAD+
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1M NaF, 6-10% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.1 41.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.328 α = 90 b = 93.328 β = 90 c = 120.66 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 315 2008-12-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1.0000 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 43.52 98.9 20.4 13.1 42294
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 41.738 39720 2081 98.06 0.26408 0.26327 0.2656 0.27991 0.282 RANDOM 31.446
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.086 r_dihedral_angle_3_deg 11.526 r_dihedral_angle_4_deg 10.656 r_dihedral_angle_1_deg 5.348 r_long_range_B_refined 3.148 r_long_range_B_other 2.921 r_angle_refined_deg 1.028 r_angle_other_deg 0.881 r_mcangle_it 0.827 r_mcangle_other 0.826
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.086 r_dihedral_angle_3_deg 11.526 r_dihedral_angle_4_deg 10.656 r_dihedral_angle_1_deg 5.348 r_long_range_B_refined 3.148 r_long_range_B_other 2.921 r_angle_refined_deg 1.028 r_angle_other_deg 0.881 r_mcangle_it 0.827 r_mcangle_other 0.826 r_mcbond_it 0.432 r_mcbond_other 0.432 r_scangle_other 0.389 r_scbond_other 0.178 r_scbond_it 0.177 r_chiral_restr 0.059 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3641 Nucleic Acid Atoms Solvent Atoms 290 Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing Coot model building