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Crystal structure of Cbln1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.1 M Na/K phosphate, pH 6.2, 2.5 M NaCl
Crystal Properties Matthews coefficient Solvent content 2.59 52.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.638 α = 90 b = 91.638 β = 90 c = 151.046 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-325 2014-10-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.9795 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 99.8 15.3 6.4 16418
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.8 50 15534 829 99.68 0.27318 0.27142 0.30696 0.2658 RANDOM 31.616
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 -0.37 0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.947 r_dihedral_angle_3_deg 13.896 r_dihedral_angle_4_deg 13.608 r_long_range_B_refined 12.513 r_long_range_B_other 12.512 r_mcangle_it 6.484 r_mcangle_other 6.482 r_dihedral_angle_1_deg 5.95 r_scangle_other 5.169 r_mcbond_it 3.773
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.947 r_dihedral_angle_3_deg 13.896 r_dihedral_angle_4_deg 13.608 r_long_range_B_refined 12.513 r_long_range_B_other 12.512 r_mcangle_it 6.484 r_mcangle_other 6.482 r_dihedral_angle_1_deg 5.95 r_scangle_other 5.169 r_mcbond_it 3.773 r_mcbond_other 3.773 r_scbond_it 3.219 r_scbond_other 3.218 r_angle_refined_deg 1.004 r_angle_other_deg 0.985 r_chiral_restr 0.037 r_bond_other_d 0.005 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3088 Nucleic Acid Atoms Solvent Atoms 22 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement HKL-2000 data processing HKL-2000 data scaling PHENIX phasing