☰ Navigation Tabs
Crystal structure of ENZbleach xylanase T28C+T60C mutant with three N-teminal residue truncation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5GV1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 298 PEG 3350, 0.1 M tri-sodium acetate pH 4.5, 0.1 M Bis-Tris pH 5.5
Crystal Properties Matthews coefficient Solvent content 2.04 39.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.253 α = 90 b = 70.886 β = 90.23 c = 85.254 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2015-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 1 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 50.01 93.2 0.032 22.9 2.1 48098
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.74 1.8 82.1 0.095 0.978 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5GV1 1.74 50 45542 2467 92.86 0.1768 0.1744 0.1741 0.2221 0.2225 RANDOM 17.024
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 -0.24 0.57 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.069 r_dihedral_angle_4_deg 14.559 r_dihedral_angle_3_deg 12.309 r_dihedral_angle_1_deg 6.961 r_mcangle_it 1.415 r_angle_refined_deg 1.379 r_scbond_it 1.171 r_mcbond_it 0.872 r_chiral_restr 0.094 r_bond_refined_d 0.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.069 r_dihedral_angle_4_deg 14.559 r_dihedral_angle_3_deg 12.309 r_dihedral_angle_1_deg 6.961 r_mcangle_it 1.415 r_angle_refined_deg 1.379 r_scbond_it 1.171 r_mcbond_it 0.872 r_chiral_restr 0.094 r_bond_refined_d 0.011 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4300 Nucleic Acid Atoms Solvent Atoms 728 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction