5GVQ
Solution structure of the first RRM domain of human spliceosomal protein SF3b49
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 0.8 mM [U-100% 13C; U-100% 15N] human spliceosomal protein SF3b49 | 90% H2O/10% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE 800 |
2 | 3D 1H-13C NOESY | 0.8 mM [U-100% 13C; U-100% 15N] human spliceosomal protein SF3b49 | 90% H2O/10% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE 800 |
3 | 2D 1H-15N HSQC | 0.8 mM [U-100% 13C; U-100% 15N] human spliceosomal protein SF3b49 | 90% H2O/10% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE 800 |
4 | 2D 1H-13C HSQC | 0.8 mM [U-100% 13C; U-100% 15N] human spliceosomal protein SF3b49 | 90% H2O/10% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE 800 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | Amber |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | data analysis | KUJIRA | Kobayashi N | |
4 | data analysis | NMRView | Johnson, One Moon Scientific | |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |