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The novel function of Osm1 under anaerobic condition in the ER was revealed by crystal structure of Osm1, a soluble fumarate reductase in yeast
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 290 30% PEG4000, 0.1M Tris, 0.2 M LiSO4
Crystal Properties Matthews coefficient Solvent content 2.13 42.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.638 α = 90 b = 109.274 β = 112.55 c = 49.933 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315r 2016-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.97760 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 50 94.5 33.1 4 164160
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.8 28.58 36796 1956 96.89 0.18111 0.17937 0.1896 0.21365 0.2216 RANDOM 24.048
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.117 r_dihedral_angle_4_deg 19.841 r_dihedral_angle_3_deg 14.843 r_dihedral_angle_1_deg 6.422 r_long_range_B_refined 6.229 r_long_range_B_other 6.217 r_scangle_other 4.961 r_scbond_it 3.406 r_scbond_other 3.405 r_mcangle_it 3.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.117 r_dihedral_angle_4_deg 19.841 r_dihedral_angle_3_deg 14.843 r_dihedral_angle_1_deg 6.422 r_long_range_B_refined 6.229 r_long_range_B_other 6.217 r_scangle_other 4.961 r_scbond_it 3.406 r_scbond_other 3.405 r_mcangle_it 3.13 r_mcangle_other 3.13 r_mcbond_it 2.291 r_mcbond_other 2.288 r_angle_refined_deg 2.035 r_angle_other_deg 0.966 r_chiral_restr 0.126 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d 0.006 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3617 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 61
Software Software Software Name Purpose REFMAC refinement Coot model building HKL-2000 data scaling PHASER phasing