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Modulation of the affinity of a HIV-1 capsid-directed ankyrin towards its viral target through critical amino acid editing
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 PEG 1000, reagent alcohol, sodium-phosphate dibasic/citric acid
Crystal Properties Matthews coefficient Solvent content 2.38 48.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.828 α = 90 b = 29.313 β = 98.58 c = 51.291 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL15A1 0.988 NSRRC BL15A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 53.31 75 28.5 3.9 19525
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.49 53.31 18504 1025 74.67 0.18785 0.18667 0.1899 0.20963 0.2104 RANDOM 23.625
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.57 0.08 0.13 0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.128 r_dihedral_angle_4_deg 16.546 r_dihedral_angle_3_deg 14.385 r_long_range_B_refined 7.953 r_long_range_B_other 7.653 r_scangle_other 6.067 r_dihedral_angle_1_deg 5.983 r_scbond_it 4.006 r_scbond_other 4.003 r_mcangle_it 3.352
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.128 r_dihedral_angle_4_deg 16.546 r_dihedral_angle_3_deg 14.385 r_long_range_B_refined 7.953 r_long_range_B_other 7.653 r_scangle_other 6.067 r_dihedral_angle_1_deg 5.983 r_scbond_it 4.006 r_scbond_other 4.003 r_mcangle_it 3.352 r_mcangle_other 3.35 r_mcbond_it 2.363 r_mcbond_other 2.362 r_angle_refined_deg 2.113 r_angle_other_deg 1.155 r_chiral_restr 0.137 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1189 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing