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Crystal structure of beta-lactamase PenP mutant-E166H
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 289 0.1M Tris pH 8.0, 22.5% PEG 3350, 0.4M ammonium acetate
Crystal Properties Matthews coefficient Solvent content 1.97 37.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.331 α = 77.84 b = 45.849 β = 75.65 c = 66.139 γ = 69.09
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315r 2012-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 0.979228 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.24 50 91.5 0.052 14.7 2 118377
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.24 1.26 70.3 0.174 1.9 4496
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.24 33.27 112438 5930 92.33 0.1396 0.1384 0.1383 0.1612 0.161 RANDOM 12.717
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.6 r_dihedral_angle_4_deg 18.529 r_dihedral_angle_3_deg 12.143 r_dihedral_angle_1_deg 6.772 r_angle_refined_deg 1.947 r_angle_other_deg 0.931 r_chiral_restr 0.13 r_bond_refined_d 0.023 r_gen_planes_refined 0.013 r_bond_other_d 0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.6 r_dihedral_angle_4_deg 18.529 r_dihedral_angle_3_deg 12.143 r_dihedral_angle_1_deg 6.772 r_angle_refined_deg 1.947 r_angle_other_deg 0.931 r_chiral_restr 0.13 r_bond_refined_d 0.023 r_gen_planes_refined 0.013 r_bond_other_d 0.008 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4016 Nucleic Acid Atoms Solvent Atoms 856 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling PDB_EXTRACT data extraction HKL-2000 data reduction PHASER phasing