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S.pneumoniae ABC-transporter substrate binding protein FusA in complex with kestose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5G5Y PDB ENTRY 5G5Y
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 20 % PEG6000, 0.1M SODIUM ACETATE PH 5.0, 0.02 M CALCIUM CHLORIDE
Crystal Properties Matthews coefficient Solvent content 2.75 49.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.61 α = 90 b = 127.82 β = 96.58 c = 120.55 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2015-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 70.14 97.7 0.13 8 5.7 140542 2 31
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.06 99.4 1.21 1.4 5.8
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 5G5Y 2.01 70.145 1.34 140533 6931 99.67 0.1707 0.1681 0.1755 0.2221 0.2277 38.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.509 f_angle_d 1.02 f_chiral_restr 0.13 f_bond_d 0.01 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15788 Nucleic Acid Atoms Solvent Atoms 1156 Heterogen Atoms 145
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALA data scaling PHASER phasing