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Structure of the snake adenovirus 1 hexon-interlacing LH3 protein, methylmercury chloride derivative
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 10 MM TRIS-HCL, 5% (V/V) GLYCEROL, 24% (W/V) PEG4000, 50 MM MOPS-NAOH PH 7.0.
Crystal Properties Matthews coefficient Solvent content 2.68 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 149.259 α = 90 b = 149.259 β = 90 c = 108.689 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M VERTICAL FOCUSING MIRROR AND HORIZONTAL FOCUSING MIRROR ORTHOGONAL IN A KIRKPATRICK-BAEZ CONFIGURATION 2015-04-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 38.7 100 0.1 14.2 9.1 52927 41.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.37 100 0.8 2.7 8.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.3 23 50184 2689 99.87 0.17317 0.17154 0.1792 0.20466 0.2119 RANDOM 43.594
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.61 0.61 -1.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.355 r_dihedral_angle_4_deg 13.1 r_dihedral_angle_3_deg 11.971 r_scangle_it 6.815 r_dihedral_angle_1_deg 6.795 r_mcangle_it 5.225 r_scbond_it 4.419 r_mcbond_it 3.498 r_mcbond_other 3.495 r_angle_refined_deg 1.521
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.355 r_dihedral_angle_4_deg 13.1 r_dihedral_angle_3_deg 11.971 r_scangle_it 6.815 r_dihedral_angle_1_deg 6.795 r_mcangle_it 5.225 r_scbond_it 4.419 r_mcbond_it 3.498 r_mcbond_other 3.495 r_angle_refined_deg 1.521 r_angle_other_deg 1.17 r_symmetry_hbond_refined 0.487 r_symmetry_vdw_refined 0.294 r_symmetry_vdw_other 0.253 r_nbd_refined 0.191 r_metal_ion_refined 0.19 r_nbtor_refined 0.174 r_nbd_other 0.163 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.09 r_nbtor_other 0.076 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.006 r_gen_planes_other 0.005 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7738 Nucleic Acid Atoms Solvent Atoms 217 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling CRANK2 phasing