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 5G4F | pdb_00005g4f

Structure of the ADP-bound VAT complex


ELECTRON MICROSCOPY
Sample
VAT (CDC48 HOMOLOGUE)
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentFEI VITROBOT MARK III
Cryogen NameETHANE-PROPANE
Sample Vitrification DetailsVITRIFICATION 1 -- CRYOGEN- ETHANE-PROPANE MIXTURE, HUMIDITY- 100, INSTRUMENT- FEI VITROBOT MARK III, METHOD- BLOT FOR 4 SECONDS BEFORE PLUNGING, DETA ...VITRIFICATION 1 -- CRYOGEN- ETHANE-PROPANE MIXTURE, HUMIDITY- 100, INSTRUMENT- FEI VITROBOT MARK III, METHOD- BLOT FOR 4 SECONDS BEFORE PLUNGING, DETAILS- SAMPLE HELD AT 4 DEGREES CELSIUS BEFORE FREEZING
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles71258
Reported Resolution (Å)7
Resolution Method
Other DetailsHOMOLOGY MODEL WAS FLEXIBLY FIT INTO DENSITY, THEN STEREO- CHEMICALLY REFINED SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-3436. (DEPOSITION ID ...HOMOLOGY MODEL WAS FLEXIBLY FIT INTO DENSITY, THEN STEREO- CHEMICALLY REFINED SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-3436. (DEPOSITION ID: 14486).
Refinement Type
Symmetry TypePOINT
Point SymmetryC1
Map-Model Fitting and Refinement
Id1
Refinement SpaceREAL
Refinement ProtocolFLEXIBLE FIT
Refinement Target
Overall B Value
Fitting Procedure
DetailsMETHOD--MOLECULAR DYNAMICS FLEXIBLE FITTING REFINEMENT PROTOCOL--EM
Data Acquisition
Detector TypeGATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å**2)32
Imaging Experiment1
Date of Experiment2015-05-01
Temperature (Kelvin)
Microscope ModelFEI TECNAI F20
Minimum Defocus (nm)1800
Maximum Defocus (nm)3500
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS2
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification25000
Calibrated Magnification34483
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)200
Imaging Details
EM Software
TaskSoftware PackageVersion
RECONSTRUCTIONRELION
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
EACH MICROGRAPH