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Structure of BT4656 in complex with its substrate D-Glucosamine-2-N, 6-O-disulfate.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 20 % PEG 3350 0.2 M SODIUM NITRATE
Crystal Properties Matthews coefficient Solvent content 2.28 46.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.218 α = 90 b = 74.55 β = 90 c = 95.005 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.39 47.5 99.5 0.07 22.8 7.4 101665 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.39 1.41 99.4 0.45 5.8 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NONE 1.39 58.65 96598 4989 99.41 0.10925 0.10817 0.124 0.13008 0.1421 RANDOM 11.41
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 0.05 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.771 r_sphericity_free 22.403 r_dihedral_angle_4_deg 20.577 r_dihedral_angle_3_deg 11.331 r_dihedral_angle_1_deg 6.474 r_sphericity_bonded 4.78 r_rigid_bond_restr 1.666 r_angle_refined_deg 1.527 r_mcangle_it 1.05 r_scbond_it 1.038
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.771 r_sphericity_free 22.403 r_dihedral_angle_4_deg 20.577 r_dihedral_angle_3_deg 11.331 r_dihedral_angle_1_deg 6.474 r_sphericity_bonded 4.78 r_rigid_bond_restr 1.666 r_angle_refined_deg 1.527 r_mcangle_it 1.05 r_scbond_it 1.038 r_angle_other_deg 0.997 r_mcbond_it 0.831 r_mcbond_other 0.82 r_chiral_restr 0.098 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3996 Nucleic Acid Atoms Solvent Atoms 524 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling BALBES phasing