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Type IV-like competence pilin TTHA1222 from Thermus thermophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.2M NA/K TARTRATE 0.1M SODIUM CITRATE PH 5.6 2.0 M AMMONIUM SULFATE
Crystal Properties Matthews coefficient Solvent content 2.83 56.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.38 α = 90 b = 84.38 β = 90 c = 97.19 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 PIXEL PILATUS 2012-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 31.86 99 0.03 34.2 6.9 28582 3.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.9 97.9 0.68 3.1 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.85 63.72 26205 1965 97.62 0.18421 0.18248 0.1918 0.20781 0.217 RANDOM 44.767
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.109 r_dihedral_angle_4_deg 11.661 r_dihedral_angle_3_deg 11.188 r_dihedral_angle_1_deg 5.716 r_mcangle_it 2.512 r_scbond_it 2.459 r_mcbond_it 1.72 r_mcbond_other 1.715 r_angle_refined_deg 1.492 r_angle_other_deg 1.053
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.109 r_dihedral_angle_4_deg 11.661 r_dihedral_angle_3_deg 11.188 r_dihedral_angle_1_deg 5.716 r_mcangle_it 2.512 r_scbond_it 2.459 r_mcbond_it 1.72 r_mcbond_other 1.715 r_angle_refined_deg 1.492 r_angle_other_deg 1.053 r_chiral_restr 0.086 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1809 Nucleic Acid Atoms Solvent Atoms 119 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling AutoSol phasing