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Linalool Dehydratase Isomerase in complex with Geraniol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other SEMET STRUCTURE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 1.1 M SODIUM TARTRATE AT PH 7.0 WITH 1% (W/V) GLYCEROL
Crystal Properties Matthews coefficient Solvent content 2.79 55.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.8 α = 90 b = 106.04 β = 90 c = 220.51 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 2015-10-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.57 90.92 100 0.15 9.4 6.7 79198 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.57 2.65 100 0.67 2.6 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT SEMET STRUCTURE 2.57 90.92 71470 3810 99.98 0.1629 0.16104 0.19787 0.1772 RANDOM 41.037
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 -3.6 3.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.887 r_dihedral_angle_4_deg 17.358 r_dihedral_angle_3_deg 15.059 r_dihedral_angle_1_deg 5.967 r_mcangle_it 4.059 r_scbond_it 3.685 r_mcbond_it 2.774 r_mcbond_other 2.774 r_angle_refined_deg 1.635 r_angle_other_deg 1.377
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.887 r_dihedral_angle_4_deg 17.358 r_dihedral_angle_3_deg 15.059 r_dihedral_angle_1_deg 5.967 r_mcangle_it 4.059 r_scbond_it 3.685 r_mcbond_it 2.774 r_mcbond_other 2.774 r_angle_refined_deg 1.635 r_angle_other_deg 1.377 r_chiral_restr 0.1 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.008 r_gen_planes_other 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14322 Nucleic Acid Atoms Solvent Atoms 761 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing