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Open conformation of Francisella tularensis ClpP at 1.7 A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other OPEN CONFORMATION OF FRANCISELLA TULARENSIS CLPP AT 1.9 A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 RATIO 1:1, 293K, HANGING DROP. RESERVOIR CONDITION: 0.2 M NACL, 30% (V/V) MPD AND 0.1 M SODIUM ACETATE PH 4.6
Crystal Properties Matthews coefficient Solvent content 2.41 48.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.226 α = 90 b = 127.924 β = 90 c = 353.843 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 48.8 94.8 0.08 9.3 5.7 460688
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 70.2 0.42 1.4 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT OPEN CONFORMATION OF FRANCISELLA TULARENSIS CLPP AT 1.9 A 1.7 176.92 437589 22958 94.7 0.20608 0.2042 0.2117 0.24195 0.2464 RANDOM 15.481
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.9 0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.684 r_dihedral_angle_4_deg 18.365 r_dihedral_angle_3_deg 14.811 r_dihedral_angle_1_deg 5.804 r_angle_refined_deg 1.299 r_mcangle_it 1.216 r_scangle_it 1.142 r_angle_other_deg 0.881 r_mcbond_it 0.715 r_mcbond_other 0.715
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.684 r_dihedral_angle_4_deg 18.365 r_dihedral_angle_3_deg 14.811 r_dihedral_angle_1_deg 5.804 r_angle_refined_deg 1.299 r_mcangle_it 1.216 r_scangle_it 1.142 r_angle_other_deg 0.881 r_mcbond_it 0.715 r_mcbond_other 0.715 r_scbond_it 0.663 r_symmetry_vdw_refined 0.282 r_nbd_refined 0.223 r_nbtor_refined 0.167 r_symmetry_vdw_other 0.166 r_symmetry_hbond_refined 0.123 r_xyhbond_nbd_refined 0.108 r_symmetry_hbond_other 0.094 r_chiral_restr 0.08 r_nbtor_other 0.072 r_xyhbond_nbd_other 0.045 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 30723 Nucleic Acid Atoms Solvent Atoms 4012 Heterogen Atoms 340
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing