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Open conformation of Francisella tularensis ClpP at 1.9 A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3P2L PDB ENTRY 3P2L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 RATIO 1:1, 293K, HANGING DROP. RESERVOIR CONDITION: 0.2 M NACL, 30% (V/V) MPD AND 0.1 M SODIUM ACETATE PH 4.6
Crystal Properties Matthews coefficient Solvent content 2.41 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.942 α = 90 b = 128.168 β = 90 c = 98.26 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 47.04 100 0.08 18.5 7.1 117661
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 100 0.46 4.4 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3P2L 1.9 98.26 111731 5861 99.96 0.20405 0.20079 0.2082 0.26937 0.2732 RANDOM 21.142
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.79 -1.27 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.881 r_dihedral_angle_4_deg 19.952 r_dihedral_angle_3_deg 16.618 r_dihedral_angle_1_deg 7.102 r_scangle_it 3.341 r_mcangle_it 2.721 r_scbond_it 2.168 r_angle_refined_deg 1.875 r_mcbond_it 1.841 r_mcbond_other 1.841
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.881 r_dihedral_angle_4_deg 19.952 r_dihedral_angle_3_deg 16.618 r_dihedral_angle_1_deg 7.102 r_scangle_it 3.341 r_mcangle_it 2.721 r_scbond_it 2.168 r_angle_refined_deg 1.875 r_mcbond_it 1.841 r_mcbond_other 1.841 r_angle_other_deg 1.041 r_symmetry_vdw_refined 0.351 r_nbd_refined 0.253 r_symmetry_vdw_other 0.214 r_symmetry_hbond_refined 0.18 r_nbtor_refined 0.179 r_nbd_other 0.156 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.115 r_nbtor_other 0.079 r_xyhbond_nbd_other 0.043 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10262 Nucleic Acid Atoms Solvent Atoms 1085 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing