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Pseudomonas aeruginosa HDAH bound to 9,9,9 trifluoro-8,8-dihydroy-N-phenylnonanamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5G0X PDB ENTRY 5G0X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.09 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.74 α = 90 b = 81.74 β = 90 c = 205.21 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.71 75.94 99.3 0.15 8.2 7.7 75585 2.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.71 1.75 100 1.18 2.1 8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 5G0X 1.71 75.94 71707 3771 99.95 0.15967 0.15787 0.19366 0.2064 RANDOM 20.653
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.66 -0.66 1.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.745 r_sphericity_free 17.34 r_dihedral_angle_4_deg 15.072 r_dihedral_angle_3_deg 11.721 r_dihedral_angle_1_deg 5.92 r_sphericity_bonded 3.899 r_rigid_bond_restr 2.005 r_angle_refined_deg 1.455 r_angle_other_deg 1.204 r_mcangle_it 1.052
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.745 r_sphericity_free 17.34 r_dihedral_angle_4_deg 15.072 r_dihedral_angle_3_deg 11.721 r_dihedral_angle_1_deg 5.92 r_sphericity_bonded 3.899 r_rigid_bond_restr 2.005 r_angle_refined_deg 1.455 r_angle_other_deg 1.204 r_mcangle_it 1.052 r_scbond_it 0.95 r_mcbond_it 0.823 r_mcbond_other 0.821 r_chiral_restr 0.081 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_gen_planes_other 0.006 r_bond_other_d 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5683 Nucleic Acid Atoms Solvent Atoms 626 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling MOLREP phasing