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Structure of the human RBBP4:MTA1(464-546) complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4PC0 PDB ENTRY 4PC0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.21 M AMMONIUM CITRATE AND 19% PEG 3350, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.53 51.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.294 α = 90 b = 150.072 β = 94.54 c = 95.591 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PIXEL 2015-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 95.3 97.7 0.16 5.3 4.2 35054 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.34 98 0.8 2 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4PC0 3.2 95.29 35054 1752 97.49 0.25114 0.24917 0.248 0.29084 0.2892 RANDOM 90.709
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.73 -2.13 -2.95 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.387 r_dihedral_angle_3_deg 13.115 r_dihedral_angle_4_deg 11.872 r_dihedral_angle_1_deg 5.573 r_mcangle_it 2.403 r_mcbond_it 1.299 r_mcbond_other 1.298 r_angle_refined_deg 1.053 r_angle_other_deg 0.856 r_scbond_it 0.733
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.387 r_dihedral_angle_3_deg 13.115 r_dihedral_angle_4_deg 11.872 r_dihedral_angle_1_deg 5.573 r_mcangle_it 2.403 r_mcbond_it 1.299 r_mcbond_other 1.298 r_angle_refined_deg 1.053 r_angle_other_deg 0.856 r_scbond_it 0.733 r_chiral_restr 0.068 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14366 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing