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Structure of human transthyretin mutant A108V
Crystallization Crystal Properties Matthews coefficient Solvent content 2.18 43.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.692 α = 90 b = 64.923 β = 90 c = 85.027 γ = 90
Symmetry Space Group P 21 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 43.69 99.8 0.04 22.9 6.5 60275 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 98.8 0.5 3.6 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NONE 1.3 64.92 57155 3039 99.92 0.17124 0.16962 0.1629 0.20294 0.1939 RANDOM 20.275
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 0.31 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.416 r_dihedral_angle_4_deg 21.512 r_dihedral_angle_3_deg 13.576 r_scangle_it 8.067 r_dihedral_angle_1_deg 6.546 r_scbond_it 5.87 r_mcangle_it 4.121 r_rigid_bond_restr 3.178 r_mcbond_it 2.708 r_angle_refined_deg 2.403
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.416 r_dihedral_angle_4_deg 21.512 r_dihedral_angle_3_deg 13.576 r_scangle_it 8.067 r_dihedral_angle_1_deg 6.546 r_scbond_it 5.87 r_mcangle_it 4.121 r_rigid_bond_restr 3.178 r_mcbond_it 2.708 r_angle_refined_deg 2.403 r_chiral_restr 0.149 r_bond_refined_d 0.03 r_bond_other_d r_angle_other_deg r_gen_planes_refined r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1796 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement