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Structure of tectonin 2 from laccaria bicolor in complex with 2-o-methyl-methyl-seleno-beta-l-fucopyranoside
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 1.6M MAGNESIUM SULFATE 0.1M MES PH 6.5. 80% LITHIUM SULFATE WAS USED AS CRYOPROTECTANT
Crystal Properties Matthews coefficient Solvent content 2.35 47.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.058 α = 90 b = 69.058 β = 90 c = 349.211 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-11-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 34.53 100 0.09 19.5 10.7 39383 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.68 100 0.43 5.4 10.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 1.65 34.53 37397 1983 99.97 0.13474 0.13306 0.1515 0.16656 0.1791 RANDOM 9.051
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 -0.08 -0.17 0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 22.297 r_dihedral_angle_2_deg 22.072 r_dihedral_angle_3_deg 11.727 r_dihedral_angle_1_deg 5.915 r_angle_refined_deg 1.701 r_scbond_it 1.178 r_mcangle_it 1.006 r_angle_other_deg 0.918 r_mcbond_it 0.626 r_mcbond_other 0.624
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 22.297 r_dihedral_angle_2_deg 22.072 r_dihedral_angle_3_deg 11.727 r_dihedral_angle_1_deg 5.915 r_angle_refined_deg 1.701 r_scbond_it 1.178 r_mcangle_it 1.006 r_angle_other_deg 0.918 r_mcbond_it 0.626 r_mcbond_other 0.624 r_chiral_restr 0.113 r_bond_refined_d 0.015 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3328 Nucleic Acid Atoms Solvent Atoms 521 Heterogen Atoms 159
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELX phasing