X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2V73 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
14.525% PEG 2K MME 0.3M CH3COONA 0.1M CH3COONA PH4.5
Crystal Properties
Matthews coefficientSolvent content
2.4545.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.502α = 90
b = 84.267β = 90.79
c = 89.996γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2015-03-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID29ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1239.6999.40.0611.83.7746682
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0499.50.393.13.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2V73239.6974842390699.310.180110.178550.21035RANDOM28.57
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.78-0.83-0.1-2.66
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.269
r_dihedral_angle_4_deg18.187
r_dihedral_angle_3_deg13.878
r_dihedral_angle_1_deg7.355
r_mcangle_it3.246
r_scbond_it3.216
r_mcbond_it2.437
r_mcbond_other2.432
r_angle_other_deg2.278
r_angle_refined_deg1.732
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.269
r_dihedral_angle_4_deg18.187
r_dihedral_angle_3_deg13.878
r_dihedral_angle_1_deg7.355
r_mcangle_it3.246
r_scbond_it3.216
r_mcbond_it2.437
r_mcbond_other2.432
r_angle_other_deg2.278
r_angle_refined_deg1.732
r_chiral_restr0.099
r_bond_refined_d0.017
r_bond_other_d0.012
r_gen_planes_refined0.011
r_gen_planes_other0.009
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9318
Nucleic Acid Atoms
Solvent Atoms755
Heterogen Atoms167

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing