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De novo structure of the binary mosquito larvicide BinAB at pH 10
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FOY PDB ENTRY 5FOY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 10 NATURALLY OCCURRING NANOCRYSTALS FORMED IN VIVO, pH 10
Crystal Properties Matthews coefficient Solvent content 3.05 59.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.67 α = 90 b = 97.286 β = 90 c = 127.654 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 PIXEL PIXEL ARRAY DETECTOR CSPAD MIRRORS 2015-02-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 FREE ELECTRON LASER SLAC LCLS BEAMLINE CXI 1.459 SLAC LCLS CXI
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 43.3 99.9 0.973 8.3 88.8 6542289 3 44.61
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.35 99.9 0.341 5.3 19.2
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 5FOY 2.4 24.045 1.34 42816 2000 99.98 0.1667 0.1645 0.1704 0.2112 0.2108
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.317 f_angle_d 0.611 f_chiral_restr 0.025 f_plane_restr 0.003 f_bond_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6315 Nucleic Acid Atoms Solvent Atoms 718 Heterogen Atoms 1
Software Software Software Name Purpose cctbx.xfel data reduction cctbx.prime data scaling SHELXD phasing PHENIX phasing PHENIX refinement