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Crystal structure of human CD45 extracellular region, domains d1-d3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other CD45 EXTRACELLULAR REGION D1-D2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 30% PEG8K, 0.2M (NH4)2SO4, 0.1M NA CACODYLATE, PH=6.5
Crystal Properties Matthews coefficient Solvent content 3.39 64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.384 α = 90 b = 132.384 β = 90 c = 58.099 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2008-04-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 50 100 0.26 6.8 4.5 5693 2 56.65
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.42 100 0.9 2 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT CD45 EXTRACELLULAR REGION D1-D2 3.3 40.81 5687 432 99.77 0.2114 0.2089 0.2201 0.2414 0.2513 RANDOM 62.99
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.6174 -3.6174 7.2347
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 20.12 t_omega_torsion 3.06 t_angle_deg 1.31 t_bond_d 0.009 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 20.12 t_omega_torsion 3.06 t_angle_deg 1.31 t_bond_d 0.009 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2030 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 70
Software Software Software Name Purpose BUSTER refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing