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Crystal structure of Influenza B polymerase with bound 5' vRNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4WSA PDB ENTRY 4WSA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 0.1 M KCL, 10 MM MGCL2, 50 MM TRIS-HCL PH 8.5 AND 30% PEG400
Crystal Properties Matthews coefficient Solvent content 3.05 59.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.57 α = 90 b = 200.54 β = 107.7 c = 133.13 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-04-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 50 99.6 0.26 7.83 6.37 86591
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.4 3.55 99.6 1.38 1.66 6.11
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4WSA 3.4 126.83 83996 2595 99.72 0.25595 0.2553 0.2539 0.27696 0.2761 RANDOM 110.884
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.41 -0.12 -9.99 7.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.481 r_dihedral_angle_3_deg 13.104 r_dihedral_angle_4_deg 11.116 r_dihedral_angle_1_deg 4.686 r_mcangle_it 2.91 r_mcbond_it 1.62 r_mcbond_other 1.619 r_scbond_it 1.158 r_angle_refined_deg 0.955 r_angle_other_deg 0.853
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.481 r_dihedral_angle_3_deg 13.104 r_dihedral_angle_4_deg 11.116 r_dihedral_angle_1_deg 4.686 r_mcangle_it 2.91 r_mcbond_it 1.62 r_mcbond_other 1.619 r_scbond_it 1.158 r_angle_refined_deg 0.955 r_angle_other_deg 0.853 r_chiral_restr 0.053 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 34112 Nucleic Acid Atoms 524 Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing