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High resolution NI,FE-CODH-320 mV with CN state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3B53 PDB ENTRY 3B53
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 15% PEG 3350, 0.2 M AMMONIUM SULFATE, 0.1 M BIS-TRIS PH 6.5,
Crystal Properties Matthews coefficient Solvent content 2 39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.216 α = 90 b = 75.511 β = 111.53 c = 71.132 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.23 40.76 99.4 0.06 14.55 3.7 159430 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.23 1.24 98.5 0.62
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3B53 1.23 66.17 151457 7972 99.48 0.1227 0.12108 0.1313 0.15321 0.1608 RANDOM 17.613
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 1.27 -0.49 -0.63
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 59.518 r_dihedral_angle_2_deg 36.919 r_dihedral_angle_4_deg 19.485 r_sphericity_bonded 16.56 r_dihedral_angle_3_deg 12.218 r_rigid_bond_restr 8.091 r_long_range_B_refined 6.627 r_dihedral_angle_1_deg 6.135 r_scangle_other 6.068 r_long_range_B_other 5.75
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 59.518 r_dihedral_angle_2_deg 36.919 r_dihedral_angle_4_deg 19.485 r_sphericity_bonded 16.56 r_dihedral_angle_3_deg 12.218 r_rigid_bond_restr 8.091 r_long_range_B_refined 6.627 r_dihedral_angle_1_deg 6.135 r_scangle_other 6.068 r_long_range_B_other 5.75 r_scbond_it 5.626 r_scbond_other 5.624 r_mcangle_other 2.633 r_mcangle_it 2.631 r_mcbond_it 2.403 r_mcbond_other 2.384 r_angle_refined_deg 1.94 r_angle_other_deg 1.452 r_chiral_restr 0.139 r_bond_refined_d 0.017 r_gen_planes_refined 0.013 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4653 Nucleic Acid Atoms Solvent Atoms 678 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing