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Crystal structure of raptor adenovirus 1 fibre head, beta-hairpin deleted form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.1 M HEPES-NAOH PH 7.5, 20% (V/V) JEFFAMINE M-600
Crystal Properties Matthews coefficient Solvent content 2.6 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.4 α = 90 b = 81.4 β = 90 c = 81.4 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M VERTICAL FOCUSING MIRROR AND HORIZONTAL FOCUSING MIRROR ORTHOGONAL IN A KIRKPATRICK-BAEZ CONFIGURATION 2014-09-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 45 100 0.02 374.5 6.6 20075 29.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 100 0.7 3.5 8.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.7 45 19065 994 99.99 0.17565 0.17446 0.18 0.19834 0.2042 COPIED FROM NATIVE 39.084
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.533 r_dihedral_angle_4_deg 14.137 r_dihedral_angle_3_deg 9.938 r_dihedral_angle_1_deg 6.991 r_scangle_it 6.087 r_mcangle_it 4.749 r_scbond_it 3.696 r_mcbond_it 2.955 r_mcbond_other 2.954 r_angle_refined_deg 1.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.533 r_dihedral_angle_4_deg 14.137 r_dihedral_angle_3_deg 9.938 r_dihedral_angle_1_deg 6.991 r_scangle_it 6.087 r_mcangle_it 4.749 r_scbond_it 3.696 r_mcbond_it 2.955 r_mcbond_other 2.954 r_angle_refined_deg 1.57 r_angle_other_deg 0.857 r_symmetry_vdw_refined 0.349 r_nbd_refined 0.206 r_nbtor_refined 0.165 r_symmetry_vdw_other 0.158 r_nbd_other 0.151 r_xyhbond_nbd_refined 0.104 r_symmetry_hbond_refined 0.089 r_chiral_restr 0.086 r_nbtor_other 0.073 r_xyhbond_nbd_other 0.045 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 972 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling