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Pseudorabies virus (PrV) nuclear egress complex proteins fitted as a hexameric lattice into a sub-tomogram average derived from focused- ion beam milled lamellae electron cryo-microscopic data
PORCINE EPITHELIAL-LIKE EMBRYONIC EFN-R KIDNEY CELLS STABLY CO- EXPRESSING PRV UL31 AND UL34, THE LATTER FUSED WITH GFP (CELL LINE DESIGNATED AS
BK-EF-UL31- 34GFP CATALOGUE NO. RIE 1083 OF THE COLLECTION OF CELL LINES IN VETERINARY MEDICINE AT THE FLI, GREIFSWALD-INSEL RIEMS, GERMANY)
Specimen Preparation
Sample Aggregation State
CELL
Vitrification Instrument
HOMEMADE PLUNGER
Cryogen Name
ETHANE-PROPANE
Sample Vitrification Details
VITRIFICATION 1 -- CRYOGEN- ETHANE-PROPANE MIXTURE, INSTRUMENT- HOMEMADE PLUNGER, METHOD- BLOTTED MANUALLY WITH A BENT STRIP OF WHATMAN NO. 1 FILTER P ...
VITRIFICATION 1 -- CRYOGEN- ETHANE-PROPANE MIXTURE, INSTRUMENT- HOMEMADE PLUNGER, METHOD- BLOTTED MANUALLY WITH A BENT STRIP OF WHATMAN NO. 1 FILTER PAPER FROM THE NON-COATED GRID SIDE FOR 2 TO 3 S IMMEDIATELY BEFORE VITRIFICATION BY THE GRAVITY-DRIVEN PLUNGING APPARATUS IN A ETHANE-PROPANE MIXTURE COOLED BY LIQUID NITROGEN, TIMERESOLVEDSTATE- TWO DAYS OF INCUBATION (37 DEGREE C, 5 PERCENT CO2) IN PLASTIC MICROSCOPE SLIDE GROWTH CHAMBERS (MUE-SLIDE 2X9 WELL, IBIDI GMBH) BEFORE CRYO- IMMOBILIZATION,
3D Reconstruction
Reconstruction Method
TOMOGRAPHY
Number of Particles
300
Reported Resolution (Å)
35
Resolution Method
Other Details
FIT OF HEXAMERIC LATTICE OF NEC INTO SUBTOMOGRAM AVERAGE. SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-3197.
Refinement Type
Symmetry Type
POINT
Point Symmetry
C6
Map-Model Fitting and Refinement
Id
1 (5E8C)
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
MINIMISATION OF ATOMIC CLASHES AND PROTRUSION FROM MAP