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E. coli PBP1b in complex with FPI-1465
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 20% w/v PEG 3350, 0.2M potassium/sodium tartate, 0.1M Bis Tris pH 8.5
Crystal Properties Matthews coefficient Solvent content 3.73 67.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.48 α = 90 b = 63.22 β = 90 c = 293.91 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2014-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 1.00 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 63.22 95.1 23.4 3.9 26383
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.85 63.22 24981 1389 93.91 0.2409 0.23806 0.29158 0.2697 RANDOM 64.105
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.18 -2.77 6.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.83 r_dihedral_angle_4_deg 20.262 r_dihedral_angle_3_deg 19.024 r_long_range_B_refined 10.097 r_long_range_B_other 10.088 r_dihedral_angle_1_deg 6.934 r_mcangle_it 6.395 r_mcangle_other 6.395 r_scangle_other 5.9 r_mcbond_it 3.874
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.83 r_dihedral_angle_4_deg 20.262 r_dihedral_angle_3_deg 19.024 r_long_range_B_refined 10.097 r_long_range_B_other 10.088 r_dihedral_angle_1_deg 6.934 r_mcangle_it 6.395 r_mcangle_other 6.395 r_scangle_other 5.9 r_mcbond_it 3.874 r_mcbond_other 3.871 r_angle_other_deg 3.629 r_scbond_it 3.531 r_scbond_other 3.524 r_angle_refined_deg 1.71 r_chiral_restr 0.125 r_bond_refined_d 0.027 r_gen_planes_other 0.021 r_gen_planes_refined 0.015 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5456 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms 100
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing