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Crystal structure of a Crenomytilus grayanus lectin in complex with galactosamine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 0.2 M imidazole malate, 25%(w/v) PEG4000
Crystal Properties Matthews coefficient Solvent content 2.61 52.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.022 α = 90 b = 71.482 β = 90 c = 94.065 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 1.0 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 95.4 0.062 40.5 12.1 38277
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 91.2 0.253 6.5 11.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 30 35679 1875 93.67 0.12408 0.12264 0.1216 0.15207 0.1507 RANDOM 12.054
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 0.02 0.22
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.715 r_dihedral_angle_2_deg 31.502 r_dihedral_angle_4_deg 19.219 r_dihedral_angle_3_deg 13.104 r_dihedral_angle_1_deg 7.355 r_sphericity_bonded 7.237 r_long_range_B_refined 4.067 r_rigid_bond_restr 3.318 r_long_range_B_other 2.865 r_scangle_other 2.168
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.715 r_dihedral_angle_2_deg 31.502 r_dihedral_angle_4_deg 19.219 r_dihedral_angle_3_deg 13.104 r_dihedral_angle_1_deg 7.355 r_sphericity_bonded 7.237 r_long_range_B_refined 4.067 r_rigid_bond_restr 3.318 r_long_range_B_other 2.865 r_scangle_other 2.168 r_scbond_it 1.855 r_scbond_other 1.854 r_angle_refined_deg 1.553 r_mcangle_other 1.481 r_mcangle_it 1.475 r_mcbond_it 1.233 r_mcbond_other 1.231 r_angle_other_deg 1.041 r_chiral_restr 0.106 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.004 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2390 Nucleic Acid Atoms Solvent Atoms 410 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHELXCD phasing