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Crystal structure of a Crenomytilus grayanus lectin in complex with galactose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 0.2 M imidazole malate, 25%(w/v) PEG4000
Crystal Properties Matthews coefficient Solvent content 2.68 54.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.26 α = 90 b = 72.542 β = 90 c = 94.622 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 1.0 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.56 30 98.1 0.037 63.9 13.1 51874
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.56 1.62 83.5 0.11 17.9 8.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.56 30 49176 2635 98.02 0.1068 0.10514 0.13881 0.1662 RANDOM 12.536
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 0.1 -0.01
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 33.564 r_dihedral_angle_2_deg 30.421 r_dihedral_angle_4_deg 18.856 r_dihedral_angle_3_deg 11.951 r_dihedral_angle_1_deg 7.297 r_sphericity_bonded 6.893 r_long_range_B_refined 3.764 r_long_range_B_other 2.754 r_rigid_bond_restr 1.646 r_scangle_other 1.625
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 33.564 r_dihedral_angle_2_deg 30.421 r_dihedral_angle_4_deg 18.856 r_dihedral_angle_3_deg 11.951 r_dihedral_angle_1_deg 7.297 r_sphericity_bonded 6.893 r_long_range_B_refined 3.764 r_long_range_B_other 2.754 r_rigid_bond_restr 1.646 r_scangle_other 1.625 r_angle_refined_deg 1.396 r_scbond_it 1.391 r_scbond_other 1.39 r_mcangle_other 1.069 r_mcangle_it 1.062 r_angle_other_deg 0.987 r_mcbond_it 0.86 r_mcbond_other 0.856 r_chiral_restr 0.089 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_bond_other_d 0.004 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2390 Nucleic Acid Atoms Solvent Atoms 515 Heterogen Atoms 84
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHELXCD phasing