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ABC substrate-binding protein Lmo0181 from Listeria monocytogenes in complex with cycloalternan
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 300 26 mg/mL protein in 0.05 M sodium chloride, 0.01 M Tris-HCl, pH 8.3, 2 mM cycloalternan against Classics II D4 (Qiagen, 0.1 M citric acid, pH 3.5, 25% w/v PEG3350)
Crystal Properties Matthews coefficient Solvent content 1.86 33.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.034 α = 90 b = 37.639 β = 93.21 c = 90.426 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2015-04-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F .97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 30 99 0.067 15.9 3.1 64488
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 99.9 0.36 3 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 29.84 61269 3207 98.83 0.15293 0.15144 0.1507 0.18099 0.1804 RANDOM 9.681
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.07 0.11 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.123 r_dihedral_angle_4_deg 18.31 r_dihedral_angle_3_deg 12.491 r_dihedral_angle_1_deg 5.436 r_long_range_B_refined 4.719 r_long_range_B_other 4.718 r_angle_refined_deg 1.853 r_angle_other_deg 1.392 r_scangle_other 1.064 r_mcangle_it 0.785
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.123 r_dihedral_angle_4_deg 18.31 r_dihedral_angle_3_deg 12.491 r_dihedral_angle_1_deg 5.436 r_long_range_B_refined 4.719 r_long_range_B_other 4.718 r_angle_refined_deg 1.853 r_angle_other_deg 1.392 r_scangle_other 1.064 r_mcangle_it 0.785 r_mcangle_other 0.785 r_scbond_it 0.698 r_scbond_other 0.698 r_mcbond_it 0.446 r_mcbond_other 0.446 r_chiral_restr 0.097 r_gen_planes_refined 0.026 r_gen_planes_other 0.021 r_bond_refined_d 0.01 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3088 Nucleic Acid Atoms Solvent Atoms 546 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHASER phasing