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Crystal structure of Marburg virus nucleoprotein core domain bound to VP35 regulation peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 289 200 mM Ammonium sulfate, 100 mM Tris pH 8.5, 18% (wt/vol) Polyethylene glycol 3350
Crystal Properties Matthews coefficient Solvent content 1.99 38.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.396 α = 90 b = 98.396 β = 90 c = 95.73 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2015-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.97853 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 100 36.78 10.3 52682
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.2 31.91 47813 2482 95.5 0.21722 0.21411 0.2111 0.27733 0.2714 RANDOM 32.403
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.04 1.04 -2.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.124 r_dihedral_angle_4_deg 19.576 r_dihedral_angle_3_deg 17.183 r_dihedral_angle_1_deg 7.744 r_long_range_B_refined 5.932 r_long_range_B_other 5.891 r_mcangle_it 3.852 r_mcangle_other 3.852 r_scangle_other 3.637 r_mcbond_it 2.568
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.124 r_dihedral_angle_4_deg 19.576 r_dihedral_angle_3_deg 17.183 r_dihedral_angle_1_deg 7.744 r_long_range_B_refined 5.932 r_long_range_B_other 5.891 r_mcangle_it 3.852 r_mcangle_other 3.852 r_scangle_other 3.637 r_mcbond_it 2.568 r_mcbond_other 2.568 r_scbond_it 2.389 r_scbond_other 2.381 r_angle_refined_deg 1.847 r_angle_other_deg 1.084 r_chiral_restr 0.11 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8001 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement SCALEPACK data reduction HKL-2000 data scaling PHASER phasing