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Crystal structure of human copper homeostatic proteins atox1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2 M tri-sodium citrate, 20 % (W/V) PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.49 64.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.493 α = 90 b = 112.493 β = 90 c = 56.634 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2014-11-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.5419
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 90.2 17.776 6.2 10336
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.75 87.4 4.667 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 24.48 10336 487 94.54 0.26235 0.261 0.27 0.28935 0.2969 RANDOM 39.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.589 r_dihedral_angle_3_deg 16.852 r_dihedral_angle_4_deg 15.557 r_dihedral_angle_1_deg 6.913 r_long_range_B_other 5.665 r_long_range_B_refined 5.664 r_mcangle_it 4.019 r_mcangle_other 4.018 r_scangle_other 3.942 r_angle_other_deg 3.802
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.589 r_dihedral_angle_3_deg 16.852 r_dihedral_angle_4_deg 15.557 r_dihedral_angle_1_deg 6.913 r_long_range_B_other 5.665 r_long_range_B_refined 5.664 r_mcangle_it 4.019 r_mcangle_other 4.018 r_scangle_other 3.942 r_angle_other_deg 3.802 r_scbond_it 2.584 r_mcbond_it 2.557 r_mcbond_other 2.553 r_scbond_other 2.541 r_angle_refined_deg 1.622 r_chiral_restr 0.077 r_bond_refined_d 0.014 r_gen_planes_other 0.007 r_gen_planes_refined 0.006 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2056 Nucleic Acid Atoms Solvent Atoms 12 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction