☰ Navigation Tabs
Venezuelan Equine Encephalitis Virus (VEEV) Nonstructural protein 2 (nsP2) Cysteine Protease
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2HWK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 290 JCSG+ Condition #15 (0.1 M Bicine pH 8.5, 20% PEG 6000)
Crystal Properties Matthews coefficient Solvent content 2.17 43.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.805 α = 90 b = 63.72 β = 90 c = 86.078 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD BRUKER SMART 6000 2015-01-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR-H 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 63.72 99.6 0.0406 21.91 6.01 40129
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.66 1.76 97.7 0.3751 3.24 2.95
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2hwk 1.66 51.21 38017 1941 99.33 0.20271 0.20229 0.2123 0.21088 0.2202 RANDOM 16.608
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.99 0.83 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.558 r_dihedral_angle_4_deg 14.585 r_dihedral_angle_3_deg 12.79 r_dihedral_angle_1_deg 5.867 r_angle_other_deg 3.651 r_long_range_B_refined 3.431 r_long_range_B_other 3.178 r_mcangle_it 1.356 r_mcangle_other 1.356 r_scangle_other 1.202
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.558 r_dihedral_angle_4_deg 14.585 r_dihedral_angle_3_deg 12.79 r_dihedral_angle_1_deg 5.867 r_angle_other_deg 3.651 r_long_range_B_refined 3.431 r_long_range_B_other 3.178 r_mcangle_it 1.356 r_mcangle_other 1.356 r_scangle_other 1.202 r_angle_refined_deg 1.163 r_mcbond_it 0.746 r_mcbond_other 0.745 r_scbond_it 0.678 r_scbond_other 0.678 r_chiral_restr 0.071 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2558 Nucleic Acid Atoms Solvent Atoms 212 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SAINT data reduction SADABS data scaling PHASER phasing