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Crystallization and preliminary X-ray crystallographic analysis of a small GTPase RhoA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2 M Ammonium citrate dibasic, 20% w/v Polyethylene glycol 3350
Crystal Properties Matthews coefficient Solvent content 2.87 57.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.407 α = 90 b = 91.407 β = 90 c = 56.202 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 2014-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 100 43.78 13.8 22677
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 45.7 21470 1159 99.96 0.17908 0.17734 0.191 0.21288 0.2211 RANDOM 25.012
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.48 r_dihedral_angle_4_deg 22.865 r_dihedral_angle_3_deg 13.475 r_long_range_B_refined 5.775 r_long_range_B_other 5.774 r_dihedral_angle_1_deg 5.75 r_scangle_other 4.277 r_scbond_other 2.867 r_scbond_it 2.854 r_mcangle_other 2.713
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.48 r_dihedral_angle_4_deg 22.865 r_dihedral_angle_3_deg 13.475 r_long_range_B_refined 5.775 r_long_range_B_other 5.774 r_dihedral_angle_1_deg 5.75 r_scangle_other 4.277 r_scbond_other 2.867 r_scbond_it 2.854 r_mcangle_other 2.713 r_mcangle_it 2.709 r_mcbond_it 1.921 r_mcbond_other 1.91 r_angle_refined_deg 1.463 r_angle_other_deg 0.757 r_chiral_restr 0.096 r_gen_planes_refined 0.013 r_bond_refined_d 0.01 r_gen_planes_other 0.001 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1419 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction